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NMF NMF
$\text{The interpretation of } W \text{ is that each column is a basis element}$. $\text{The interpretation of } H \text
2022-11-07 algorithms
algorithms
scBERT scBERT
BackgroundBERT is used in nature language processing (NLP) to find the correlation between context, and translate from o
2022-09-30 deep learning
attention cell type annotation algorithm
Pytorch Distributed Data Parallel (DDP) Pytorch Distributed Data Parallel (DDP)
Single node multi-GPUimport torch import torch.nn as nn import torch.nn.functional as F import torch.multiprocessing as
2022-09-19 algorithms
spatial transcriptomics cell segment
Cell Segmentation Cell Segmentation
def score_and_mask_pixels( adata: AnnData, layer: str, k: int, method: Literal["gauss", "moran", "EM", "
2022-09-16 spateo
spatial tanscriptomics
VScode in linux VScode in linux
Using VScode in linux though Remote-sshUsing vscode through Remote-ssh extension is a kind of popular usage of vscode. W
2022-09-16 linux
tips
segment_densities segment_densities
BackgroundTo align the RNA with its nucliei is an important part in the analysis of high-resolution spatial transcriptom
2022-09-16 Wulilichao
spatial transcriptomics
Using zsh as your shell Using zsh as your shell
#安装zsh #下载zsh源代码 #下载最新发行版zsh源代码http://www.zsh.org/pub/zsh.tar.gz，解压后进入zsh源代码目录。 #配置zsh编译安装选项 #这里，主要设置zsh的安装目录，让zsh安装在用户
2022-09-16 linux
tips
Tree based VS Deep learning Tree based VS Deep learning
Why tree-based models beat deep learning-based on tabular dataWhy Tree-Based Models Beat Deep Learning on Tabular Data |
2022-09-14 Wulilichao
DBSCAN algorithm DBSCAN algorithm
Spatial ClusteringChapter 9 Spatial clustering | 02.522: Urban Data & Methods II: Computational Urban Analysis (0252
2022-09-14 algorithm
spatial transciptomics
Using conda to help install R packages Using conda to help install R packages
CondaConda is a software which could help you to govern your software programming environment. However, if you are not s
2022-09-13 conda
tips conda
Test image asset Test image asset
Hexo figure problemI am try to use typora, github.io and hexo to build my blog. However, I encounter that the image impo
2022-09-13 Hexo
blog
Louvain and leiden algorithm Louvain and leiden algorithm
Clustering algorithmFor the default usage of clustering algorithm in scanpy, there are 4 settings. Original Louvain Lo
2022-09-13 algorithm
clustering
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